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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1811
ChIP-seq
917
total RNA-seq
434
ATAC-seq
290
single cell RNA-seq
131
DNase-seq
69
WGBS
53
pCHi-C
51
snATAC-seq
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
290
Transcription
Target of assay
3
control
Date released
98
August, 2021
49
April, 2018
48
July, 2018
40
September, 2020
34
May, 2022
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
204
tsv
122
fastq
106
bam
106
bigWig
52
zippedFastqFolder
2
csv
Organism
290
Homo sapiens
Biosample type
175
primary cell
115
tissue
Organ
93
heart
80
pancreas
70
epithelium
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
musculature of body
Project
208
AMP
73
HPAP
9
LungMap
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
208
AMP-T2D consortium
73
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
Audit category:
7
inconsistent ontology term
month_released!
December, 2019
February, 2021
organ_slims!
kidney
BIOSAMPLE
ASSAY
290 results
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single cell RNA-seq
primary cell
Langerhans cell
73
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
lung
9
+ See 12 more…
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