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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
871
total RNA-seq
371
ChIP-seq
177
ATAC-seq
80
single cell RNA-seq
57
WGBS
17
DNase-seq
11
snATAC-seq
10
Hi-C
10
MeRIP-seq
6
pCHi-C
5
small RNA-seq
4
Capture-C
3
RRBS
2
FAIRE-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
57
DNA methylation
Date released
41
May, 2022
6
August, 2017
6
February, 2021
4
November, 2018
Available data
41
zippedFastqFolder
13
fastq
6
bam
6
bed bedMethyl
6
bigBed bedMethyl
6
bigWig
6
tsv
Organism
57
Homo sapiens
Biosample type
47
primary cell
10
tissue
Organ
51
pancreas
47
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
10
AMP
Genome assembly (visualization)
6
GRCh38
Lab
47
Klaus Kaestner, Upenn
10
AMP-T2D consortium
month_released!
December, 2019
BIOSAMPLE
ASSAY
57 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
adipose tissue
3
subcutaneous abdominal adipose tissue
3
body of pancreas
2
pancreas
2
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