Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
10
snATAC-seq
9
single cell RNA-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
48
DNA accessibility
16
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
19
April, 2020
7
May, 2019
February, 2021
5
July, 2019
3
February, 2020
1
March, 2020
Available data
108
bam
91
bigWig
86
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
135
Homo sapiens
Biosample type
136
tissue
Organ
914
pancreas
783
liver
486
epithelium
343
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
19
LungMap
Genome assembly (visualization)
90
GRCh38
90
hg19
Lab
117
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
month_released!
December, 2019
February, 2021
BIOSAMPLE
ASSAY
136 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
+ See 4 more…
See all biosamples
Download