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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
80
ChIP-seq
6
RRBS
5
DNase-seq
4
ATAC-seq
3
WGBS
1
FAIRE-seq
Assay category
89
Transcription
80
DNA binding
10
DNA accessibility
9
DNA methylation
Target of assay
167
histone modification
histone
89
broad histone mark
76
narrow histone mark
44
control
35
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
329
February, 2021
318
November, 2017
314
May, 2020
298
August, 2021
259
May, 2021
204
February, 2023
200
May, 2022
198
June, 2019
188
August, 2017
168
July, 2018
117
October, 2019
96
July, 2019
87
November, 2018
63
December, 2017
60
March, 2020
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
December, 2019
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
168
fastq
164
bam
135
bigWig
89
tsv
34
bed narrowPeak
17
bed bed3+
11
bigBed narrowPeak
10
tagAlign
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
4
bigBed broadPeak
Organism
187
Homo sapiens
Biosample type
136
tissue
31
in vitro differentiated cells
21
primary cell
Organ
122
pancreas
56
connective tissue
adipose tissue
22
liver
15
epithelium
7
musculature of body
Project
188
AMP
Genome assembly (visualization)
141
hg19
132
GRCh38
Lab
188
AMP-T2D consortium
Audit category:
11
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
December, 2019
target.investigated_as!
histone
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
188 results
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Clear Filters
total RNA-seq
ChIP-seq
RRBS
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
89
14
1
1
liver
16
1
3
skeletal muscle tissue
3
4
pancreas
2
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
30
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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