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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ATAC-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
58
DNA accessibility
18
Transcription
Date released
213
August, 2021
145
August, 2017
123
November, 2017
101
February, 2021
95
October, 2019
82
February, 2023
66
May, 2021
66
May, 2022
47
March, 2020
47
September, 2023
32
May, 2020
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
16
April, 2019
16
July, 2019
10
November, 2020
9
October, 2017
February, 2018
8
January, 2018
8
January, 2021
8
November, 2018
5
December, 2018
5
December, 2019
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
September, 2017
3
March, 2019
3
May, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
30
bed narrowPeak
10
bed bed3
7
txt
4
bed bed3+
4
tsv
3
bed bedgraph
3
bigWig
Organism
81
Homo sapiens
Biosample type
primary cell
60
tissue
16
in vitro differentiated cells
6
cell line
Organ
31
eye
19
pancreas
15
epithelium
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
heart
Project
59
AMP
23
T1D
Genome assembly (visualization)
45
hg19
GRCh38
Lab
56
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
month_released!
February, 2018
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
ilium
1
1
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in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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