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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
2
total RNA-seq
1
GRO-seq
Assay category
13
DNA binding
2
Transcription
Target of assay
6
histone
6
histone modification
5
narrow histone mark
4
control
3
transcription factor
1
broad histone mark
Date released
13
December, 2017
February, 2018
2
May, 2021
1
January, 2018
Available data
15
bam
14
fastq
11
bigWig
8
bed narrowPeak
3
bed bed3+
2
tsv
Organism
16
Homo sapiens
Biosample type
16
in vitro differentiated cells
8
cell line
Organ
97
connective tissue
24
epithelium
16
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
16
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
1
hg18
Lab
16
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2018
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
total RNA-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
9
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
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