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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
Assay category
41
DNA binding
Target of assay
23
transcription factor
18
histone
18
histone modification
12
chromatin remodeller
10
narrow histone mark
8
broad histone mark
4
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
11
December, 2017
8
November, 2017
5
November, 2018
February, 2018
1
October, 2018
Available data
54
bam
54
bigWig
54
fastq
52
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
41
Homo sapiens
Biosample type
15
in vitro differentiated cells
13
cell line
6
tissue
5
primary cell
2
stem cell
Organ
14
liver
9
pancreas
6
connective tissue
5
epithelium
3
embryo
Project
41
AMP
Genome assembly (visualization)
41
hg19
39
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
41
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
February, 2018
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
Posterior foregut
2
definitive endodermal cell
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
13
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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