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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
121
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
134
DNA binding
123
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
transcription factor
35
narrow histone mark
34
broad histone mark
19
control
11
RNA binding protein
3
chromatin remodeller
Date released
126
May, 2021
54
August, 2017
43
December, 2017
February, 2018
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
252
bam
228
bigWig
116
bed narrowPeak
116
tsv
102
fastq
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
315
Homo sapiens
Biosample type
2499
tissue
988
primary cell
642
cell line
315
in vitro differentiated cells
10
stem cell
Organ
83
connective tissue
21
epithelium
16
embryo
15
liver
1
adipose tissue
1
heart
Project
315
AMP
Genome assembly (visualization)
249
hg19
216
GRCh38
4
hg18
Lab
261
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
month_released!
February, 2018
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
5
8
1
1
cardiomyocytes
59
embryonic stem cell
37
5
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
1
7
10
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