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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
51
ATAC-seq
41
WGBS
21
snATAC-seq
20
Hi-C
3
pCHi-C
Assay category
72
DNA accessibility
52
Transcription
41
DNA methylation
20
3D chromatin structure
Date released
134
May, 2022
19
September, 2020
12
March, 2020
10
February, 2023
3
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
August, 2018
Available data
3353
bam
3138
bigWig
1801
bed narrowPeak
1585
tsv
1319
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
188
Homo sapiens
Biosample type
158
primary cell
15
tissue
12
in vitro differentiated cells
3
cell line
Organ
87
pancreas
85
epithelium
7
connective tissue
4
bone element
4
skeleton
3
heart
3
liver
2
blood vessel
2
musculature of body
2
vasculature
1
adipose tissue
1
brain
1
vein
Project
156
HPAP
32
AMP
Genome assembly (visualization)
33
hg19
2
GRCh38
Lab
156
Klaus Kaestner, Upenn
30
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
1
inconsistent replicate
month_released!
February, 2018
BIOSAMPLE
ASSAY
188 results
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single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
pCHi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
1
+ See 1 more…
tissue
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
+ See 8 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
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