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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
55
ChIP-seq
2
ATAC-seq
Assay category
201
DNA accessibility
55
DNA binding
Target of assay
50
histone
50
histone modification
28
broad histone mark
22
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
184
June, 2019
40
August, 2017
12
November, 2017
9
October, 2019
5
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2230
bam
2091
bigWig
1347
bed narrowPeak
1010
tsv
810
fastq
674
bigBed narrowPeak
304
tagAlign
256
bed broadPeak
254
bed bed3+
220
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
31
bed bedMethyl
31
bigBed bedMethyl
21
hic
20
bedpe bed3+
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
250
Homo sapiens
Biosample type
207
tissue
47
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
adipose tissue
2
nerve
1
spleen
Project
256
AMP
Genome assembly (visualization)
232
hg19
231
GRCh38
Lab
254
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
month_released!
February, 2018
organ_slims!
liver
adipose tissue
BIOSAMPLE
ASSAY
256 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 41 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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