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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1499
ChIP-seq
1369
total RNA-seq
451
ATAC-seq
299
single cell RNA-seq
126
DNase-seq
85
RNA microarray
78
snATAC-seq
66
WGBS
55
pCHi-C
33
Hi-C
17
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
DNA methylation
Date released
11
July, 2019
August, 2017
Available data
11
bed bedMethyl
11
bigBed bedMethyl
Organism
11
Homo sapiens
Biosample type
6
primary cell
5
tissue
Organ
6
epithelium
kidney
2
brain
2
heart
2
pancreas
1
connective tissue
1
eye
1
liver
1
musculature of body
1
pericardium
1
vasculature
Project
11
AMP
Genome assembly (visualization)
11
hg19
Lab
11
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2018
August, 2017
organ_slims!
kidney
BIOSAMPLE
ASSAY
11 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
retinal pigment epithelial cell
1
+ See 1 more…
tissue
brain
1
heart left ventricle
1
islet of Langerhans
1
pancreas
1
pericardium
1
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