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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
115
total RNA-seq
81
ATAC-seq
44
WGBS
34
single cell RNA-seq
22
snATAC-seq
6
RRBS
4
DNase-seq
1
FAIRE-seq
Assay category
179
DNA binding
149
Transcription
108
DNA accessibility
50
DNA methylation
Target of assay
130
histone modification
129
histone
69
broad histone mark
60
narrow histone mark
36
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
239
fastq
235
bam
227
bigWig
134
bed narrowPeak
134
zippedFastqFolder
89
tsv
63
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
23
bed bed3+
14
bigBed broadPeak
7
txt
4
bed bedMethyl
4
bigBed bedMethyl
Organism
479
Homo sapiens
Biosample type
293
tissue
193
primary cell
Organ
292
pancreas
connective tissue
109
epithelium
94
liver
57
adipose tissue
28
musculature of body
Project
352
AMP
134
HPAP
Genome assembly (visualization)
251
hg19
184
GRCh38
Lab
288
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
February, 2018
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
486 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
95
18
1
1
liver
48
20
20
3
1
skeletal muscle tissue
22
1
1
4
pancreas
14
right lobe of liver
1
1
primary cell
pancreatic alpha cell
13
23
25
Langerhans cell
33
21
pancreatic beta cell
13
14
16
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
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