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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
21
snATAC-seq
1
Hi-C
Assay category
102
DNA accessibility
60
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
314
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
38
bed narrowPeak
25
bam
25
fastq
20
bigWig
7
txt
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
204
Homo sapiens
Biosample type
134
primary cell
70
tissue
Organ
109
pancreas
80
epithelium
40
liver
1
musculature of body
Project
134
HPAP
70
AMP
Genome assembly (visualization)
41
hg19
2
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
AMP-T2D consortium
1
Maike Sander, UCSD
month_released!
February, 2018
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
204 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
22
6
1
skeletal muscle tissue
1
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