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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
41
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
25
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
43
bam
43
fastq
25
bigWig
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
1
tsv
Organism
57
Homo sapiens
Biosample type
57
tissue
1
in vitro differentiated cells
Organ
496
liver
316
pancreas
230
epithelium
199
kidney
130
heart
125
connective tissue
98
vasculature
97
bone element
93
blood vessel
75
brain
68
blood
68
bodily fluid
66
limb
63
artery
58
adipose tissue
54
musculature of body
39
eye
19
spleen
18
ureter
14
nerve
12
skeleton
11
lung
8
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
58
AMP
Genome assembly (visualization)
25
hg19
24
GRCh38
Lab
58
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2018
target.investigated_as!
histone
assay_slims!
Transcription
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
1
3
3
1
subcutaneous abdominal adipose tissue
5
3
+ See 1 more…
in vitro differentiated cells
white fat cell
1
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