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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
43
ChIP-seq
6
ATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
401
Transcription
43
DNA binding
11
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
7
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
446
bam
426
bigWig
401
tsv
43
fastq
14
bed narrowPeak
12
bigBed narrowPeak
8
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tagAlign
1
tar
Organism
465
Homo sapiens
Biosample type
456
tissue
9
primary cell
1
in vitro differentiated cells
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
20
lung
19
nerve
19
spleen
18
embryo
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
466
AMP
Genome assembly (visualization)
429
hg19
425
GRCh38
Lab
466
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2018
target.investigated_as!
histone
BIOSAMPLE
ASSAY
466 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
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primary cell
endothelial cell of umbilical vein
2
2
2
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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