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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
62
total RNA-seq
43
ATAC-seq
27
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
129
DNA binding
70
DNA accessibility
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
197
bigWig
182
bam
181
bed narrowPeak
157
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
360
Homo sapiens
Biosample type
293
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
769
liver
635
connective tissue
594
pancreas
479
adipose tissue
360
heart
314
kidney
254
brain
192
blood vessel
192
vasculature
158
bone element
138
artery
118
epithelium
117
limb
75
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
25
spleen
24
embryo
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
360
AMP
Genome assembly (visualization)
239
GRCh38
166
hg19
Lab
320
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
February, 2018
July, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
360 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
1
3
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
35
2
heart
14
1
2
18
1
heart right ventricle
13
17
1
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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