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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
77
ChIP-seq
62
total RNA-seq
43
ATAC-seq
30
DNase-seq
3
Hi-C
3
pCHi-C
Assay category
155
Transcription
77
DNA binding
73
DNA accessibility
3
3D chromatin structure
Target of assay
55
histone
55
histone modification
30
broad histone mark
25
narrow histone mark
12
transcription factor
10
control
8
RNA binding protein
Date released
92
August, 2021
66
February, 2021
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
157
tsv
156
bigWig
140
bed narrowPeak
134
bam
48
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
tagAlign
3
bedpe bed3+
3
hic
Organism
311
Homo sapiens
Biosample type
236
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
320
kidney
311
heart
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
25
spleen
24
embryo
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
311
AMP
Genome assembly (visualization)
199
GRCh38
124
hg19
Lab
271
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
month_released!
February, 2018
July, 2019
April, 2019
BIOSAMPLE
ASSAY
311 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
tissue
left cardiac atrium
18
40
1
coronary artery
5
1
35
2
heart
1
5
2
18
1
right cardiac atrium
18
6
1
heart left ventricle
18
1
3
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
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