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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
35
DNA accessibility
7
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
5
March, 2020
4
August, 2017
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
55
Homo sapiens
Biosample type
51
tissue
4
primary cell
Organ
727
pancreas
529
connective tissue
416
adipose tissue
395
epithelium
302
kidney
256
heart
238
liver
159
bone element
131
vasculature
128
blood vessel
105
artery
56
brain
55
eye
55
musculature of body
53
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
7
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
February, 2020
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
55 results
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DNase-seq
Hi-C
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
4
1
1
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
4
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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