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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
399
Transcription
8
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
406
bigWig
405
bam
399
tsv
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
415
Homo sapiens
Biosample type
413
tissue
2
primary cell
1
in vitro differentiated cells
Organ
727
pancreas
529
connective tissue
416
adipose tissue
395
epithelium
302
kidney
256
heart
238
liver
159
bone element
131
vasculature
128
blood vessel
105
artery
56
brain
55
eye
55
musculature of body
53
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
7
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
416
AMP
Genome assembly (visualization)
407
hg19
406
GRCh38
Lab
416
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2020
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
416 results
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total RNA-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
subcutaneous adipose tissue
6
1
1
1
omental fat pad
4
1
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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