Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
RRBS
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
7
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
9
July, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
89
Homo sapiens
Biosample type
76
tissue
13
primary cell
Organ
943
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
388
heart
350
kidney
272
brain
232
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
89
musculature of body
69
blood
69
bodily fluid
59
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
89
AMP
Genome assembly (visualization)
70
hg19
53
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
February, 2020
assay_title!
RRBS
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
89 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
2
1
gastrocnemius medialis
4
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
See all biosamples
Download