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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
68
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
399
Transcription
68
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
RNA binding protein
Date released
386
February, 2021
57
August, 2017
18
October, 2018
12
July, 2019
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
437
bam
420
bigWig
399
tsv
39
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
483
Homo sapiens
Biosample type
481
tissue
2
primary cell
1
in vitro differentiated cells
Organ
936
pancreas
727
liver
672
connective tissue
516
epithelium
484
adipose tissue
379
heart
351
kidney
271
brain
228
vasculature
223
blood vessel
159
bone element
138
artery
119
limb
94
musculature of body
59
blood
59
bodily fluid
59
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
484
AMP
Genome assembly (visualization)
421
hg19
419
GRCh38
Lab
484
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
February, 2020
audit.WARNING.category!
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
484 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
10
1
1
1
omental fat pad
4
8
1
1
2
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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