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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
66
snATAC-seq
39
total RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
184
Transcription
66
DNA accessibility
1
3D chromatin structure
Date released
54
May, 2022
47
September, 2023
44
February, 2023
40
September, 2020
39
February, 2021
19
April, 2020
17
May, 2021
8
January, 2021
5
March, 2023
Available data
180
bam
bigWig
100
fastq
96
tsv
84
bed narrowPeak
84
tagAlign
73
zippedFastqFolder
1
hic
Organism
268
Homo sapiens
Biosample type
197
primary cell
67
tissue
7
cell line
2
stem cell
Organ
pancreas
142
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
172
HPAP
47
KPMP
30
T1D
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
1
GRCh38
Lab
172
Klaus Kaestner, Upenn
47
KPMP
30
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
month_released!
February, 2020
award.project!
AMP
organ_slims!
pancreas
files.file_type!
bigWig
BIOSAMPLE
ASSAY
273 results
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single cell RNA-seq
snATAC-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
exocrine cell
39
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 14 more…
tissue
kidney
47
lung
9
10
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
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