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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
38
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
4
total RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
43
DNA accessibility
10
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
February, 2020
3
June, 2019
3
March, 2020
Available data
100
bed narrowPeak
87
bam
70
bigWig
62
bigBed narrowPeak
11
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
130
Homo sapiens
Biosample type
130
tissue
66
cell line
37
primary cell
Organ
545
connective tissue
504
pancreas
486
adipose tissue
360
liver
299
kidney
270
heart
253
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
80
musculature of body
71
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
130
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
130
AMP-T2D consortium
month_released!
February, 2020
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
2
1
1
thoracic aorta
16
1
2
ascending aorta
16
1
1
pulmonary artery
2
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