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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
22
DNA binding
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
5
July, 2019
3
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
37
Homo sapiens
Biosample type
36
tissue
1
primary cell
Organ
256
pancreas
210
kidney
207
epithelium
139
heart
109
liver
93
bone element
89
connective tissue
53
eye
48
vasculature
47
adipose tissue
47
blood vessel
37
artery
37
musculature of body
31
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
limb
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
20
hg19
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2020
files.file_type!
bam
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle cell
1
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