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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
5
RRBS
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
22
DNA binding
3D chromatin structure
5
DNA methylation
2
DNA accessibility
1
Transcription
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
February, 2020
2
May, 2022
1
January, 2018
1
July, 2019
1
March, 2020
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
31
Homo sapiens
Biosample type
30
tissue
1
primary cell
Organ
247
pancreas
209
kidney
199
epithelium
176
heart
105
liver
93
bone element
88
connective tissue
53
eye
47
adipose tissue
43
vasculature
42
blood vessel
37
artery
31
musculature of body
28
brain
20
lung
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
limb
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
18
hg19
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2020
files.file_type!
bam
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
RRBS
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
psoas muscle
1
primary cell
skeletal muscle cell
1
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