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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
Assay category
18
DNA binding
8
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2019
6
February, 2021
5
July, 2019
February, 2020
1
May, 2019
Available data
114
bam
92
bed narrowPeak
91
bigWig
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
35
tissue
Organ
854
pancreas
654
connective tissue
479
adipose tissue
448
epithelium
432
liver
296
heart
250
kidney
159
bone element
150
vasculature
148
blood vessel
147
brain
114
artery
54
eye
47
musculature of body
37
embryo
35
limb
20
lung
16
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
13
GRCh38
12
hg19
Lab
35
AMP-T2D consortium
month_released!
February, 2020
files.file_type!
bigBed narrowPeak
organ_slims!
intestine
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial nerve
11
1
4
tibial artery
5
1
gastrocnemius medialis
4
muscle of leg
1
1
distal epiphysis of femur
1
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