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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
62
ChIP-seq
5
DNase-seq
5
Hi-C
4
single cell RNA-seq
4
total RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
62
DNA binding
8
Transcription
7
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
49
histone
49
histone modification
31
broad histone mark
18
narrow histone mark
11
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
21
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
February, 2020
Available data
78
bam
65
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
9
tsv
7
bed bed3+
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
85
Homo sapiens
Biosample type
59
tissue
26
primary cell
Organ
581
connective tissue
474
pancreas
445
adipose tissue
390
heart
354
kidney
325
liver
267
epithelium
253
brain
227
vasculature
224
blood vessel
159
bone element
artery
119
limb
92
musculature of body
60
eye
42
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
63
hg19
57
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
February, 2020
files.file_type!
fastq
organ_slims!
artery
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
4
1
2
1
thoracic aorta
16
2
1
ascending aorta
16
1
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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