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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
Assay category
26
DNA binding
Target of assay
397
transcription factor
390
histone
390
histone modification
242
broad histone mark
148
narrow histone mark
90
RNA binding protein
81
recombinant protein
26
chromatin remodeller
5
other context
5
other post-translational modification
Date released
11
November, 2017
6
January, 2019
3
December, 2017
3
November, 2018
2
December, 2018
1
August, 2017
Available data
28
bam
28
bed narrowPeak
28
bigWig
28
fastq
26
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
26
Homo sapiens
Biosample type
22
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
15
liver
10
blood
10
bodily fluid
1
epithelium
Project
26
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
26
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
11
inconsistent control read length
inconsistent control run_type
month_released!
February, 2020
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
cell line
HepG2
12
GM12878
10
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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