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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
24
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
51
DNA binding
47
DNA accessibility
Target of assay
44
histone
44
histone modification
23
narrow histone mark
21
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
42
June, 2019
19
August, 2017
14
September, 2018
13
October, 2019
5
September, 2017
4
May, 2019
1
November, 2020
Available data
593
bigWig
592
bam
400
fastq
284
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
98
Homo sapiens
Biosample type
445
tissue
355
cell line
98
primary cell
17
in vitro differentiated cells
Organ
61
epithelium
22
pancreas
21
vasculature
17
blood vessel
16
kidney
15
connective tissue
13
vein
brain
9
musculature of body
6
heart
3
eye
2
liver
Project
98
AMP
Genome assembly (visualization)
94
GRCh38
91
hg19
Lab
98
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
February, 2020
organ_slims!
brain
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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