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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
66
single cell RNA-seq
28
total RNA-seq
22
ATAC-seq
Assay category
94
Transcription
72
DNA binding
22
DNA accessibility
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
17
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
317
bam
291
bigWig
188
fastq
151
bed narrowPeak
150
tsv
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
188
Homo sapiens
Biosample type
169
primary cell
19
in vitro differentiated cells
Organ
465
liver
376
pancreas
188
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
188
AMP
Genome assembly (visualization)
173
hg19
171
GRCh38
Lab
188
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
February, 2020
BIOSAMPLE
ASSAY
188 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
primary cell
pancreatic beta cell
13
12
10
7
pancreatic alpha cell
13
12
10
6
pancreatic ductal cell
13
9
4
4
pancreatic acinar cell
8
9
4
5
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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