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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
90
DNA binding
3
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
39
transcription factor
26
histone
26
histone modification
25
control
13
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
72
August, 2017
23
October, 2018
2
July, 2018
1
April, 2018
1
August, 2018
November, 2018
1
October, 2017
Available data
592
bam
569
bigWig
476
tsv
100
fastq
74
bed narrowPeak
27
bigBed narrowPeak
26
bed bed3+
22
tagAlign
9
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
100
Homo sapiens
Biosample type
55
in vitro differentiated cells
42
tissue
3
primary cell
Organ
464
pancreas
412
liver
257
epithelium
100
connective tissue
45
blood
45
bodily fluid
43
adipose tissue
27
embryo
19
brain
15
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
100
AMP
Genome assembly (visualization)
74
GRCh38
72
hg19
Lab
100
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
February, 2020
November, 2018
BIOSAMPLE
ASSAY
100 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
53
1
white fat cell
1
tissue
subcutaneous adipose tissue
12
1
omental fat pad
11
1
white adipose tissue
12
adipose tissue
2
3
primary cell
pancreatic stellate cell
3
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