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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
136
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
183
DNA binding
138
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
39
February, 2018
38
August, 2021
28
December, 2017
26
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
276
bam
240
bigWig
131
tsv
126
fastq
114
bed narrowPeak
40
tagAlign
23
bed bed3+
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
3
bigBed narrowPeak
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
372
Homo sapiens
Biosample type
2392
tissue
1074
primary cell
372
in vitro differentiated cells
261
cell line
10
stem cell
Organ
93
connective tissue
29
embryo
24
epithelium
liver
3
pancreas
1
adipose tissue
1
heart
Project
372
AMP
Genome assembly (visualization)
276
hg19
251
GRCh38
4
hg18
Lab
325
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
February, 2020
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
liver
BIOSAMPLE
ASSAY
372 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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