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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
9
ChIP-seq
1
GRO-seq
Assay category
10
Transcription
9
DNA binding
Target of assay
6
histone
6
histone modification
5
narrow histone mark
control
3
transcription factor
1
broad histone mark
Date released
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
1
January, 2018
Available data
19
bam
19
bigWig
10
fastq
10
tsv
8
bed narrowPeak
2
bed bed3+
Organism
20
Homo sapiens
Biosample type
12
in vitro differentiated cells
8
cell line
Organ
892
pancreas
682
liver
647
connective tissue
494
epithelium
465
adipose tissue
370
heart
342
kidney
243
brain
211
vasculature
206
blood vessel
159
bone element
130
artery
102
limb
88
musculature of body
63
blood
63
bodily fluid
59
eye
31
nerve
20
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
1
hg18
Lab
20
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
February, 2020
February, 2018
target.investigated_as!
control
BIOSAMPLE
ASSAY
20 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
7
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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