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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
4
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
160
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
111
histone
111
histone modification
67
broad histone mark
44
narrow histone mark
34
control
15
transcription factor
5
RNA binding protein
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
201
bed narrowPeak
166
bam
142
bigWig
123
tsv
95
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
432
Homo sapiens
Biosample type
344
tissue
42
in vitro differentiated cells
41
cell line
6
primary cell
Organ
132
kidney
113
heart
56
blood vessel
56
vasculature
35
liver
28
brain
8
embryo
7
artery
7
limb
7
musculature of body
6
epithelium
5
connective tissue
4
pancreas
1
adipose tissue
Project
433
AMP
Genome assembly (visualization)
199
GRCh38
155
hg19
Lab
266
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
month_released!
February, 2020
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
433 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
+ See 20 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
9
2
1
1
H1-hESC
8
HEK293T
2
primary cell
hepatocyte
4
kidney epithelial cell
2
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