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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
203
DNA binding
12
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
31
control
Date released
86
October, 2019
79
November, 2017
28
May, 2019
18
July, 2019
13
October, 2017
February, 2020
2
March, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
14
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
227
Homo sapiens
Biosample type
217
tissue
10
primary cell
Organ
924
pancreas
727
liver
672
connective tissue
502
epithelium
486
adipose tissue
360
heart
276
kidney
227
brain
216
vasculature
214
blood vessel
159
bone element
135
artery
83
limb
69
blood
69
bodily fluid
56
eye
48
musculature of body
40
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
227
AMP
Genome assembly (visualization)
171
GRCh38
127
hg19
Lab
227
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
month_released!
February, 2020
organ_slims!
ureter
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
227 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
1
temporal lobe
15
1
1
angular gyrus
15
substantia nigra
15
+ See 70 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
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