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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
30
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
200
DNA binding
34
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
177
histone
177
histone modification
113
narrow histone mark
64
broad histone mark
26
control
Date released
86
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
fastq
14
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
253
Homo sapiens
Biosample type
241
tissue
12
primary cell
Organ
581
connective tissue
474
pancreas
445
adipose tissue
354
kidney
350
heart
325
liver
267
epithelium
253
brain
227
vasculature
224
blood vessel
159
bone element
139
artery
119
limb
92
musculature of body
60
eye
42
nerve
22
vein
20
lung
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
253
AMP
Genome assembly (visualization)
202
GRCh38
147
hg19
Lab
253
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
month_released!
February, 2020
organ_slims!
ureter
files.file_type!
fastq
BIOSAMPLE
ASSAY
253 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
11
12
1
1
1
layer of hippocampus
23
temporal lobe
15
1
1
caudate nucleus
15
1
substantia nigra
16
+ See 75 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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