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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
14
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
49
DNA accessibility
14
DNA binding
Target of assay
20
histone
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
8
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
February, 2020
2
June, 2019
1
March, 2020
Available data
82
bam
65
bigWig
57
tsv
54
bed narrowPeak
6
tagAlign
5
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
120
Homo sapiens
Biosample type
66
cell line
52
tissue
2
primary cell
Organ
794
pancreas
687
liver
604
connective tissue
457
adipose tissue
431
epithelium
324
kidney
293
heart
162
vasculature
159
bone element
157
blood vessel
119
artery
87
brain
70
limb
68
blood
68
bodily fluid
61
musculature of body
57
eye
25
embryo
20
lung
19
spleen
18
nerve
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
120
AMP
Genome assembly (visualization)
108
GRCh38
73
hg19
Lab
120
AMP-T2D consortium
month_released!
February, 2020
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
120 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
36
3
2
tibial artery
1
5
2
pulmonary artery
2
adrenal gland
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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