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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
46
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
50
DNA accessibility
34
DNA binding
Target of assay
21
histone
21
histone modification
14
broad histone mark
9
control
7
narrow histone mark
5
transcription factor
RNA binding protein
Date released
66
February, 2021
35
February, 2023
28
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
February, 2020
2
June, 2019
Available data
102
bam
85
bigWig
74
bed narrowPeak
56
tsv
24
bigBed narrowPeak
7
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
140
Homo sapiens
Biosample type
72
tissue
66
cell line
2
primary cell
Organ
936
pancreas
732
liver
672
connective tissue
516
epithelium
484
adipose tissue
379
heart
351
kidney
271
brain
228
vasculature
223
blood vessel
159
bone element
138
artery
119
limb
94
musculature of body
59
blood
59
bodily fluid
59
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
140
AMP-T2D consortium
month_released!
February, 2020
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
4
2
tibial artery
1
23
2
pulmonary artery
2
islet of Langerhans
1
pituitary gland
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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