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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
45
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
56
Transcription
49
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
February, 2020
2
June, 2019
1
March, 2020
Available data
102
bam
85
bigWig
74
bed narrowPeak
57
tsv
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
140
Homo sapiens
Biosample type
72
tissue
66
cell line
2
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
390
heart
354
kidney
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
128
GRCh38
93
hg19
Lab
140
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2020
organ_slims!
large intestine
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
36
5
2
tibial artery
1
23
2
pulmonary artery
2
gastric (mucosa of stomach)
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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