Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
27
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
32
DNA accessibility
9
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
12
fastq
11
tsv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
253
Homo sapiens
Biosample type
253
tissue
primary cell
Organ
776
liver
643
connective tissue
599
pancreas
487
adipose tissue
337
heart
318
kidney
253
brain
196
blood vessel
196
vasculature
158
bone element
137
artery
119
limb
118
epithelium
80
musculature of body
61
blood
61
bodily fluid
55
eye
42
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
253
AMP
Genome assembly (visualization)
203
GRCh38
143
hg19
Lab
253
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
February, 2020
biosample_type!
primary cell
BIOSAMPLE
ASSAY
253 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
temporal lobe
15
1
1
caudate nucleus
15
1
substantia nigra
16
+ See 75 more…
See all biosamples
Download