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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
34
DNase-seq
5
Hi-C
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
Assay category
235
DNA binding
40
DNA accessibility
12
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
202
histone
202
histone modification
123
narrow histone mark
79
broad histone mark
33
control
3
RNA binding protein
3
transcription factor
Date released
107
October, 2019
91
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
February, 2020
3
March, 2020
2
November, 2018
1
February, 2023
Available data
263
bam
237
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
21
fastq
14
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
296
Homo sapiens
Biosample type
253
tissue
43
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
354
kidney
350
heart
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
296
AMP
Genome assembly (visualization)
229
GRCh38
181
hg19
Lab
296
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
month_released!
February, 2020
BIOSAMPLE
ASSAY
296 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
RRBS
pCHi-C
tissue
brain
20
14
1
1
1
layer of hippocampus
23
temporal lobe
15
1
1
caudate nucleus
15
1
substantia nigra
16
+ See 75 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
+ See 3 more…
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