Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
54
DNA accessibility
13
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
19
April, 2020
7
May, 2019
6
February, 2021
5
July, 2019
February, 2020
1
March, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
138
Homo sapiens
Biosample type
139
tissue
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
390
heart
354
kidney
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
urinary bladder
Project
120
AMP
19
LungMap
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
120
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
month_released!
February, 2020
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
4
tibial artery
23
2
1
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
+ See 10 more…
See all biosamples
Download