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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
5
RRBS
4
Hi-C
2
small RNA-seq
2
total RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
DNA methylation
5
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
66
bigWig
60
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
4
tsv
2
fastq
1
txt
Organism
89
Homo sapiens
Biosample type
75
tissue
14
primary cell
Organ
931
pancreas
787
liver
680
connective tissue
518
epithelium
488
adipose tissue
352
kidney
343
heart
272
brain
229
vasculature
223
blood vessel
159
bone element
139
artery
119
limb
89
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
89
AMP
Genome assembly (visualization)
69
hg19
51
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
February, 2020
March, 2020
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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