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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
5
RRBS
4
total RNA-seq
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
99
DNA binding
44
DNA accessibility
7
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
43
June, 2019
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
10
July, 2019
8
January, 2021
7
May, 2019
5
March, 2020
February, 2020
2
January, 2018
2
May, 2022
Available data
123
bigWig
117
bam
114
bed narrowPeak
101
bigBed narrowPeak
62
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
7
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
163
Homo sapiens
Biosample type
80
tissue
61
cell line
22
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
354
kidney
350
heart
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
155
AMP
8
T1D
Genome assembly (visualization)
128
hg19
107
GRCh38
Lab
155
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
month_released!
February, 2020
BIOSAMPLE
ASSAY
163 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
RRBS
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
2
1
gastrocnemius medialis
4
+ See 2 more…
cell line
GM12878
60
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
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