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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
35
DNase-seq
8
total RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
74
DNA binding
38
DNA accessibility
11
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
57
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
43
June, 2019
42
October, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
February, 2020
2
May, 2022
1
January, 2018
Available data
99
bam
99
bigWig
87
bed narrowPeak
73
bigBed narrowPeak
48
bed broadPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
11
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
136
Homo sapiens
Biosample type
122
tissue
14
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
524
epithelium
489
adipose tissue
354
kidney
350
heart
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
104
hg19
84
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
February, 2020
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
tibial nerve
35
2
4
1
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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