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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
56
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
62
Transcription
51
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
7
July, 2019
6
August, 2021
February, 2020
3
June, 2019
3
March, 2020
Available data
153
bam
126
bigWig
112
bed narrowPeak
63
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
196
Homo sapiens
Biosample type
130
tissue
66
cell line
primary cell
Organ
776
liver
643
connective tissue
599
pancreas
487
adipose tissue
337
heart
318
kidney
253
brain
196
blood vessel
196
vasculature
158
bone element
137
artery
119
limb
118
epithelium
80
musculature of body
61
blood
61
bodily fluid
55
eye
42
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
196
AMP
Genome assembly (visualization)
169
GRCh38
134
hg19
Lab
196
AMP-T2D consortium
month_released!
February, 2020
biosample_type!
primary cell
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
1
4
2
1
1
thoracic aorta
16
2
1
ascending aorta
16
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
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