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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
57
total RNA-seq
46
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
63
Transcription
52
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
26
October, 2019
8
July, 2019
6
August, 2021
4
June, 2019
February, 2020
3
March, 2020
Available data
155
bam
128
bigWig
113
bed narrowPeak
64
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
198
Homo sapiens
Biosample type
130
tissue
66
cell line
2
primary cell
Organ
945
pancreas
790
liver
682
connective tissue
epithelium
489
adipose tissue
354
kidney
350
heart
274
brain
233
vasculature
227
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
198
AMP
Genome assembly (visualization)
171
GRCh38
136
hg19
Lab
198
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
198 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
1
4
2
1
1
thoracic aorta
16
2
1
ascending aorta
16
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
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