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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
7
total RNA-seq
4
Hi-C
ATAC-seq
1
WGBS
Assay category
66
DNA binding
36
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
67
October, 2019
32
June, 2019
7
May, 2019
5
July, 2019
3
February, 2020
Available data
106
bam
89
bigWig
84
bed narrowPeak
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
114
Homo sapiens
Biosample type
114
tissue
Organ
766
liver
762
pancreas
389
epithelium
282
brain
271
kidney
248
heart
209
connective tissue
132
vasculature
126
blood vessel
114
limb
99
adipose tissue
95
musculature of body
68
blood
68
bodily fluid
42
nerve
38
artery
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
114
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2021
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
5
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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