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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
36
DNase-seq
7
total RNA-seq
4
Hi-C
2
ATAC-seq
1
WGBS
Assay category
38
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Date released
32
June, 2019
10
October, 2019
February, 2021
5
July, 2019
3
February, 2020
Available data
43
bam
43
bigWig
38
bed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
50
Homo sapiens
Biosample type
50
tissue
Organ
695
pancreas
363
epithelium
294
kidney
236
liver
199
heart
76
connective tissue
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
50
limb
47
artery
32
adipose tissue
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
9
bone element
8
nerve
8
skeleton
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
43
GRCh38
42
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
February, 2021
assay_title!
ChIP-seq
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
50 results
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DNase-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
5
1
gastrocnemius medialis
1
4
tibial artery
2
1
1
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