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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
246
total RNA-seq
199
ATAC-seq
175
single cell RNA-seq
41
WGBS
31
DNase-seq
29
snATAC-seq
16
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
423
Transcription
260
DNA accessibility
52
DNA methylation
10
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
134
May, 2022
88
February, 2023
85
May, 2021
59
September, 2020
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
10
October, 2019
8
January, 2021
7
August, 2020
6
August, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
364
bam
364
bigWig
270
fastq
263
tsv
153
zippedFastqFolder
68
bed narrowPeak
52
bigBed narrowPeak
33
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
761
Homo sapiens
Biosample type
1325
tissue
761
primary cell
170
in vitro differentiated cells
90
cell line
7
stem cell
Organ
308
epithelium
270
pancreas
24
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
361
AMP
279
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
378
hg19
327
GRCh38
Lab
359
AMP-T2D consortium
279
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
29
inconsistent ontology term
4
audit script error
month_released!
February, 2021
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
761 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
25
1
Langerhans cell
73
21
pancreatic beta cell
21
23
12
16
1
monocyte
54
15
1
1
exocrine cell
39
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